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Hi-C sequencing
Brief

Hi-C technology is derived from the technology of Chromosome Conformation Capture-3C, takes the entire nucleus as the research object, adopts high-throughput sequencing technology, and combines bioinformatics methods to study the spatial relationship of the entire chromatin DNA in the whole genome, obtain high-resolution three-dimensional structure information of chromatin by capturing all DNA interaction patterns inside, and analyze it with ATAC-seq, ChIP-seq, genome, transcriptome data, etc., thereby elucidating the related mechanism of organism trait formation from gene regulatory network and epigenetic network.

Fields
  • Analysis of chromatin structure analysis
  • Regulation of gene expression
  • Detection of structural variation
  • Study on disease mechanism
Process
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Parameters
Product TypeSequencing StrategyRecommended Data AmountCycle
Hi-C Sequencing

NovaSeq 6000 PE150

DNBSEQ-T7 PE150

120G raw data ( arabidopsis bin size 5Kb )

270G raw data ( human bin size 40Kb )

60 days ( standard analysis )
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Requirements
  • Total amount of DNA for initial database construction of a single librarythe total is 10 μg.

  • Sample delivery requirements for individual libraries (insitu Hi-C)
  • Animal Cells/LibraryAnimal Tissue/LibraryPlant Tissue/LibraryBlood/LibraryMicrobiology/Library
    5×106 cells1g2-3g
    100ml
    50ml ( culture medium with OD600 values of 1.0-1.5 ) 
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  • Requirements for plant samples

    On fresh living plants, it is recommended to take relatively young leaves, root hairs, and other parts for sufficient cross-linking; When genomes such as wheat are more complex, fresh tender leaves are required for sample submission.

  • Requirements for tumor samples

    Species: suspended cells, adherent cells, fresh tissues

  • Sample TypeSuspension CellsAttached CellsFresh Tissues
    insitu Hi-C5×1065×106100ml
    sis Hi-C5×1045×10410mg
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